PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen09g032810.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family bHLH
Protein Properties Length: 226aa    MW: 26066.3 Da    PI: 4.6668
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen09g032810.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH28.62.6e-0976123454
                       HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
               HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                       ++  rEr RR+++N++f+ L ++l +    +  K +K++iL  A++ +++L
  Sopen09g032810.1  76 NKACRERLRREKLNERFSDLCSVLEPG---RPVKTDKMAILGDAIRVLNQL 123
                       6789**********************8...89****************999 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474596.94E-1364138IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.46E-770126No hitNo description
PROSITE profilePS5088812.67872123IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.2E-676123IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.1E-1076145IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.7E-878129IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 226 aa     Download sequence    Send to blast
MDQFDSFRDA NWDLIDFNSF IDEESPIDFF WNDQTQDLSA VAEVEAPLSS AALQECIETE  60
CPRKRGRNES CSKQGNKACR ERLRREKLNE RFSDLCSVLE PGRPVKTDKM AILGDAIRVL  120
NQLKTESEEY KEMNQKLMEE IKTLKEEKNE LREEKLALRA DKERMEQELK ATASPASFIP  180
PHPAAYQPAV NKMAVFPSYG YVPMWQYLQP SSRDTSQDHE LRPPAA
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00102PBMTransfer from AT4G14410Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754481e-136HG975448.1 Solanum pennellii chromosome ch09, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015086018.11e-168PREDICTED: transcription factor bHLH104-like
SwissprotQ8L4671e-74BH104_ARATH; Transcription factor bHLH104
TrEMBLK4CW131e-167K4CW13_SOLLC; Uncharacterized protein
STRINGSolyc09g089870.2.11e-167(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA47622132
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G14410.23e-53bHLH family protein